From
a “who’s who” of pioneers in the field comes a unique resource covering the
latest advances in next-generation genome sequencing and assembly. This
groundbreaking book includes non-conventional techniques that are paving the
way to potential new biomedical applications. You get unparalleled access to
state-of-the-art DNA sequencing technologies, new algorithmic sequence assembly
techniques, and emerging methods for both resequencing and de novo genome
analysis which all together give you the most solid foundation possible for
tackling the full range of experimental and computational challenges in the
genome sciences today.
This
first-of-its-kind resource walks you step-by-step through new sequencing
technologies involving sequencing by synthesis, nanopore sequencing, polymerase
colonies, and single molecule sequencing. It then explores the latest
algorithmic techniques for DNA sequence assembly and offers expert insight into
assembly packages like Arachne, EULER, CAP, AMASS, and Celera. You also get coverage
of emerging biotechnology-oriented approaches to the resequencing and analysis
of genomes, with the latest techniques for SNP, genome rearrangement, and
comparative sequencing and assembly. Moreover, the book critiques strengths and
weaknesses of existing techniques and spotlights possible ways to improve them.
The most comprehensive treatment of the field’s frontier topics, this
definitive volume will prove indispensable in your efforts to achieve more
rapid and accurate DNA sequencing and to develop the next generation of
high-throughput methods and devices.
" . . . Written by pioneers in the specialty, the resource details DNA sequencing technologies, algorithmic sequence assembly techniques, and emerging methods for resequencing and de novo genome analysis. . . ."
---Biophotonics International, December 2007
New
DNA Sequencing Technology — An overview. Massively parallel sequencing by
synthesis-pyrosequencing. Massively parallel sequencing by synthesis-other
approaches. Polymerase colonies (“polonies”). Nanopore sequencing. Sequencing
within a zero-mode waveguide.
DNA
Fragment Assembly — An overview. Arachne. EULER. CAP. Phred/Phrap/Consed.
AMASS. TIGRassembler and Scaffolder. Celera Assembler.
Comparative
Sequencing — An overview. Single nucleotide polymorphism (SNP). Genome
rearrangement. Epigenomics. Comparative sequencing and assembly.
Sun
Kim is
associate professor and associate director of bioinformatics at Indiana
University’s Center for Genomics and Bioinformatics. Prior
to IU, he worked at DuPont Central Research
as Senior Computer Scientist and at the University of Illinois as
Director of Bioinformatics. Dr. Kim earned his Ph.D. in Computer Science
at the University of Iowa.
Elaine
R. Mardis is
associate professor at Washington University School of Medicine, St. Louis, and
co-director of the university’s Genome Sequencing Center where she leads the Technology
Development group. She received her Ph.D. in biochemistry from the University
of Oklahoma.
Haixu
Tang
is an
assistant professor of informatics at Indiana University. He received his Ph.D.
in computational biology from the Shanghai Institute of Biochemistry, China.
Click here to download a sample chapter from this title in PDF format.